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Mathematical Biology & Bioinformatics | Volume 8   Issue 2   Year 2013
Russian versionEnglish version   
Volume 8   Issue 2   Year 2013
Recognition of Latent Periodicity in DNA Sequences

Chaley M.B., Kutyrkin V.A.

Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
Moscow State Technical University n.a. N.E. Bauman, Moscow, 107005, Russia

 
Abstract. Based on spectral-statistical approach elaborated earlier, the direct methods for recognizing a new type of periodicity in DNA sequences – latent profile periodicity which expands on the notion of approximate tandem repeat – are proposed. Comparison of the proposed methods with the other approaches, taking into account only the indirect indicators of the latent periodicity existence in DNA sequence, was done.
 
Key words: approximate tandem repeat, latent profile periodicity, statistical analysis of textual structure of DNA sequence.
 
Table of Contents Original Article
Math. Biol. Bioinf.
2013;8(2):502-512
doi: 10.17537/2013.8.502
published in Russian

Abstract (rus.)
Abstract (eng.)
Full text (rus., pdf)
References

 

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