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Volume 20   Issue 1   Year 2025
References

  1. Han X.X., Rodriguez R.S., Haynes C.L., Ozaki Y., Zhao B. Surface-enhanced Raman spectroscopy. Nat. Rev. Methods Primers. 2021;1. Article No. 87. doi: 10.1038/s43586-021-00083-6
  2. Almohammed S., Fularz A., Kanoun M.B., Goumri-Said S., Alkhateeb Aljaafari A., Rodriguez B.J., Rice J. Structural Transition-Induced Raman Enhancement in Bioinspired Diphenylalanine Peptide Nanotubes. ACS Applied Materials & Interfaces. 2022;14(10):12504−12514. doi: 10.1021/acsami.1c22770
  3. Tao K., Makam P., Aizen R., Gazit E. Self-assembling peptide semiconductors. Science. 2017;358(6365). Article No. eaam9756. doi: 10.1126/science.aam9756
  4. Zelenovskiy P.S., Nuraeva A.S., Kopyl S., Arkhipov S.G., Vasilev S.G., Bystrov V.S., Gruzdev D.A., Waliczek M., Svitlyk V., Shur V.Ya., Mafra L., Kholkin A.L. Chirality-dependent growth of self-assembled diphenylalanine microtubes. Cryst. Growth Des. 2019;19:6414−6421. doi: 10.1021/acs.cgd.9b00884
  5. Bystrov V., Coutinho J., Zelenovskiy P., Nuraeva A., Kopyl S., Zhulyabina O., Tverdislov V. Structures and properties of the self-assembling diphenylalanine peptide nanotubes containing water molecules: modeling and data analysis. Nanomaterials. 2020;10(10). Article No. 1999. doi: 10.3390/nano10101999
  6. Bystrov V., Paramonova E., Zelenovskii P., Kopyl S., Shen H., Lin T., Fridkin V. Photoelectronic Properties of Chiral Self-Assembled Diphenylalanine Nanotubes: A Computational Study. Symmetry. 2023;15. Article No. 504. doi: 10.3390/sym15020504
  7. Wang Q., Bao J., Zhang Y., Wang Y., Qiu D., Yang J., Zhang J., Gao H., Wu Y., Dong H., Yang H., Wei Z. High-Performance Organic Narrow Dual-Band Circular Polarized Light Detection for Encrypted Communications and Color Imaging. Adv. Mater. 2024;36(16). Article No. e2312396. doi: 10.1002/adma.202312396
  8. Yang Y., Liu L., Wei Z. Chiral conjugated molecular assemblies interact with substances and light. Acc. Mater. Res. 2024;5(3):329−346. doi: 10.1021/accountsmr.3c00251
  9. Wu S., Deng J., Wang X., Zhou J., Jiao H., Zhao Q., Lin T., Shen H., Meng X., Chen Y., Chu J., Wang J. Polarization photodetectors with configurable polarity transition enabled by programmable ferroelectric-doping patterns. Nat. Commun. 2024;15. Article No. 8743. doi: 10.1038/s41467-024-52877-3
  10. Bystrov V.S., Zelenovskiy P.S., Nuraeva A.S., Kopyl S., Zhulyabina O.A., Tverdislov V.A. Chiral peculiar properties of self-organization of diphenylalanine peptide nanotubes: modeling of structure and properties. Math. Biol. Bioinform. 2019;14(1):94–124. doi: 10.17537/2019.14
  11. HyperChem 8.0. Tools for Molecular Modeling. Gainesville: Hypercube. Inc., 2010.
  12. Stewart J.J.P. Stewart Computational Chemistry. MOPAC2016 [Electronic resource]. Colorado Springs, CO, USA, 2016. http://openmopac.net/MOPAC2016.html (accessed 09.06.2025).
  13. Lennard-Jones J.E. On the determination of molecular fields. II. From the equation of state of a gas. Proc. R. Soc. Lond. A. 1924;106:463–477. doi: 10.1098/rspa.1924
  14. Zelenovskiy P.S., Domingues E.M., Slabov V., Kopyl S., Ugolkov V.L., Figueiredo F.M.L., Kholkin A.L. Efficient Water Self-Diffusion in Diphenylalanine Peptide Nanotubes. ACS Applied Materials & Interfaces. 2020;12:27485–27492. doi: 10.1021/acsami.0c03658
  15. Zelenovskii P., Soares M., Bornes C., Marin-Montesinos I., Sardo M., Kopyl S., Kholkin A., Mafra L., Figueiredo F. Detection of helical water flows in sub-nanometer channels. Nat. Commun. 2024;15. Article No. 5516. doi: 10.1038/s41467-024-49878-7
  16. Andrade-Filho T., Ferreira F.F., Alves W.A., Rocha A.R. The effects of water molecules on the electronic and structural properties of peptide nanotubes. Phys. Chem. Chem. Phys. 2013;15:7555–7559. doi: 10.1039/c3cp43952f
  17. Salehli F., Aydin A.O., Chovan D., Kopyl S., Bystrov V., Thompson D., Tofail S.A.M., Kholkin A. Nanoconfined water governs polarization-related properties of self-assembled peptide nanotubes. Nano Select. 2021;2:817-829. doi: 10.1002/nano.202000220
  18. Zelenovskiy P., Yuzhakov V., Nuraeva A., Kornev M., Shur V.Ya., Kopyl S., Kholkin A., Vasilev S., Tofail S.A.M. The effect of water molecules on elastic and piezoelectric properties of diphenylalanine microtubes. IEEE Transactions on Dielectrics and Electrical Insulation. 2020;27:1474-1477. doi: 10.1109/TDEI.2020.008921
  19. Bystrov V.S. Molecular self-assembled helix peptide nanotubes based on some amino acid molecules and their dipeptides: molecular modeling studies. J. Mol. Mod. 2024;30. Article No. 257. doi: 10.1007/s00894-024-05995-0
  20. Bystrov V.S., Paramonova E.V., Kovrigina C.A, Ledeneva O.R., Belova E.V., Zelenovskii P.S., Kopyl S.A. Kholkin A.L., Fridkin V.M. Photoelectronic Properties of Dileucine and Diisoleucine Nanotubes with Confined Water. Ferroelectrics. 2025;619(1-3):33-39. doi: 10.1080/00150193.2024.2327957
  21. Bystrov V., Sidorova A., Lutsenko A., Shpigun D., Malyshko E., Nuraeva A., Zelenovskiy P., Kopyl S., Kholkin A. Modeling of Self-Assembled Peptide Nanotubes and Determination of Their Chirality Sign Based on Dipole Moment Calculations. Nanomaterials. 2021;11. Article No. 2415. doi: 10.3390/nano11092415
  22. Bystrov V.S., Paramonova E.V., Zelenovskiy P.S., Kopyl S.A., Meng X., Shen H., Lin T., Fridkin V.M. Nanomaterials Based on Peptide Nanotubes with Graphene and Ferroelectric Polymers Layers: Modelling and Numerical Studies of Photoelectronic Properties. In: Engineering Design Applications V. Advanced Structured Materials. Eds. Öchsner A., Altenbach H. Cham.: Springer, Germany, 2023. Volume 171:115-123. doi: 10.1007/978-3-031-26466-5_7
  23. Fridkin V.M. Photoferroelectrics. New York: Springer-Verlag, 1979. doi: 10.1007/978-3-642-81351-1
  24. Fridkin V., Ducharme S. Ferroelectricity at the Nanoscale. Basics and Applications. Berlin: Springer-Verlag, 2014. doi: 10.1007/978-3-642-41007-9
  25. Dai Z., Rappe, A. M. Recent progress in the theory of bulk photovoltaic effect. Chem. Phys. Rev. 2023;4. Article No. 011303. doi: 10.1063/5.0101513
  26. Wu G., Wang X., Chen Y., Wu S., Wu B., Jiang Y., Shen H., Lin T., Liu Q., Wang X., Zhou P., Zhang S., Hu W., Meng X., Chu J., Wang J. MoTe2 p-n homojunctions defined by ferroelectric polarization. Adv. Mater. 2020;32(16). Article No. 1907937. doi: 10.1002/adma.201907937
  27. Wang X., Shen H., Chen Y., Wu G., Wang P., Xia H., Lin T., Zhou P., Hu W., Meng X., Chu J., Wang J. Multimechanism Synergistic Photodetectors with Ultrabroad Spectrum Response from 375 nm to 10 μm. Adv. Sci. 2019;6(15). Article No. 1901050. doi: 10.1002/advs.201901050
  28. Boyd R.W. Nonlinear Optics. San Diego: Academic Press, 2003.
  29. Handelman A., Apter B., Turko N., Rosenman G. Linear and nonlinear optical waveguiding in bio-inspired peptide nanotubes. Acta Biomaterialia. 2016;30:72-77. doi: 10.1016/j.actbio.2015.11.004
  30. Khanra S., Ghosh K., Ferreira F.F., Alves W.A., Punzo F., Yu P., Guha S. Probing nonlinear optical coefficients in self-assembled peptide nanotubes. Phys. Chem. Chem. Phys. 2017;19:3084−3093. doi: 10.1039/C6CP07879F
  31. Liu Y., Xing P. Circularly Polarized Light Responsive Materials: Design Strategies and Applications. Adv. Mater. 2023;35. Article No. 2300968. doi: 10.1002/adma.202300968
Table of Contents
Original Article
Vladimir Bystrov, Ekaterina Paramonova, Pavel Zelenovskiy Diphenylalanine Peptide Nanotubes as Substrates for Surface-Enhanced Raman Spectroscopy and Photonic Applications. Ìàthematical biology and bioinformatics. 2025;20(1):197-211. doi: 10.17537/2025.20.197
(published in English)

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