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Том 21   Выпуск 1   Год 2026
Список литературы

  1. Ball P. Water as an active constituent in cell biology. Chem. Rev. 2008;108(1):74–108. doi: 10.1021/cr068037a
  2. Voeikov V.L. Fundamental Role of Water in Bioenergetics. In: Biophotonics and Coherent Systems in Biology. Boston, MA: Springer US, 2005. P. 89–104. doi: 10.1007/978-0-387-28417-0_7
  3. Weichselbaum E. Origin of proton affinity to membrane/water interfaces. Sci. Rep. 2017;7(1). Article No. 4553. doi: 10.1038/s41598-017-04675-9
  4. Tashkin V.Y., Vishnyakova V.E., Shcherbakov A.A., Finogenova O.A., Ermakov Y.A., Sokolov V.S. Changes of the capacitance and boundary potential of a bilayer lipid membrane associated with a fast release of protons on its surface. Biochemistry (Moscow), Supplement Series A: Membrane and Cell Biology. 2019;13(2):155-160. doi: 10.1134/S1990747819020077
  5. Heberle J., Riesle J., Thiedemann G., Oesterhelt D., Dencher N.A. Proton migration along the membrane surface and retarded surface to bulk transfer. Nature. 1994;370(6488):379–382. doi: 10.1038/370379a0
  6. Medvedev E., Stuchebrukhov A. Mechanism of long-range proton translocation along biological membranes. FEBS Lett. 2012;587(4):345–349. doi: 10.1016/j.febslet.2012.12.010
  7. Kell D.B. A protet-based model that can account for energy coupling in oxidative and photosynthetic phosphorylation. Biochimica Biophysica Acta. Bioenergetics. 2024;1865(4). Article No. 149504. doi: 10.1016/j.bbabio.2024.149504
  8. Nesterov S., Chesnokov Y., Kamyshinsky R., Panteleeva A, Lyamzaev K, Vasilov R, Yaguzhinsky L. Ordered Clusters of the Complete Oxidative Phosphorylation System in Cardiac Mitochondria. International Journal of Molecular Sciences. 2021;22(3). Article No. 1462. doi: 10.3390/ijms22031462
  9. Cherepanov D.A., Feniouk B.A., Junge W., Mulkidjanian A.Y. Low dielectric permittivity of water at the membrane interface: effect on the energy coupling mechanism in biological membranes. Biophys. J. 2003;85(2):1307–1316. doi: 10.1016/S0006-3495(03)74565-2
  10. Toth A., Meyrat A., Stoldt S., Santiago R., Wenzel D., Jakobs S., von Ballmoos C., Ott M. Kinetic coupling of the respiratory chain with ATP synthase, but not proton gradients, drives ATP production in cristae membranes. Proc. Natl. Acad. Sci. 2020;117(5):2412–2421. doi: 10.1073/pnas.1917968117
  11. Rieger B., Junge W., Busch K.B. Lateral pH gradient between OXPHOS complex IV and F0F1 ATP-synthase in folded mitochondrial membranes. Nat. Commun. 2014;5(1). Article No. 3103. doi: 10.1038/ncomms4103
  12. Sjöholm J., Bergstrand J., Nilsson T., Šachl R., Ballmoos C.V., Widengren J., Brzezinski P. The lateral distance between a proton pump and ATP synthase determines the ATP-synthesis rate. Sci. Rep. 2017;7(1). Article No. 2926. doi: 10.1038/s41598-017-02836-4
  13. Springer A., Hagen V., Cherepanov D.A., Antonenko Y.N., Pohl P. Protons migrate along interfacial water without significant contributions from jumps between ionizable groups on the membrane surface. Proc. Natl. Acad. Sci. 2011;108(35):14461–14466. doi: 10.1073/pnas.1107476108
  14. Cherepanov D.A., Junge W., Mulkidjanian A.Y. Proton transfer dynamics at the membrane/water interface: dependence on the fixed and mobile pH buffers. on the size and form of membrane particles, and on the interfacial potential barrier. Biophys. J. 2004;86(2):665–680. doi: 10.1016/S0006-3495(04)74146-6
  15. Wraight C.A. Chance and design–Proton transfer in water, channels and bioenergetic proteins. Biochimica et Biophysica Acta (BBA) – Bioenergetics. 2006;1757(8):886–912. doi: 10.1016/j.bbabio.2006.06.017
  16. Zundel G. Hydrogen bonds with large proton polarizability and proton transfer processes in electrochemistry and biology. Advances in Chemical Physics. 1999:1–217. doi: 10.1002/9780470141700.ch1
  17. Antonchenko B. Ya., Davydov A. S., Zolotaryuk A.V. Solitons and proton motion in ice‐like structures. Phys. Status Solidi B. 1983;115(2):631–640. doi: 10.1002/pssb.2221150234
  18. Tsironis G.P., Pnevmatikos S. Proton conductivity in quasi-one-dimensional hydrogen-bonded systems: Nonlinear approach. Physical Review B. 1989;39(10):7161–7173. doi: 10.1103/PhysRevB.39.7161
  19. Zolotaryuk A.V., Pnevmatikos S., Savin A.V. Two-sublattice kink dynamics and ionic defects in hydrogen-bonded chains. Physica D: Nonlinear Phenomena. 1991;51(1):407–417. doi: 10.1016/0167-2789(91)90248-8
  20. Zolotaryuk A., Pnevmatikos S. One-component model for proton transport in hydrogen-bonded chains. Physics Letters A. 1990;143(4):233–238. doi: 10.1016/0375-9601(90)90745-A
  21. Zolotaryuk A.V., Peyrard M., Spatschek K.H. Collective proton transport with weak proton-proton coupling. Phys. Rev. E. 2000;62:5706–5710. doi: 10.1103/PhysRevE.62.5706
  22. Bystrov V., Tazieva T. Nonlinear dynamics of hydrogen-containing systems: Ferroelectrics and ionic channels of biomembranes. Physics of Vibrations. 2000;8(2):128–132.
  23. Bystrov V., Sapronova A., Tazieva T., Green M. Non-linear dynamics of proton transfer in hydrogen-bonded systems. Physics of Vibrations. 2001;9(3):168–72.
  24. Peyrard M., Kruskal M.D. Kink dynamics in the highly discrete sine-Gordon system. Physica D: Nonlinear Phenomena. 1984;14(1):88–102. doi: 10.1016/0167-2789(84)90006-X
  25. Grauer R., Spatschek K.H., Zolotaryuk A.V. Chaotic proton dynamics in the hydrogen bond. Physical Review E. 1993;47(1):236–47. doi: 10.1103/PhysRevE.47.236
  26. Lupichev L.N., Savin A.V., Kadantsev V.N. Synergetics of Molecular Systems. Springer International Publishing, 2015. (Springer Series in Synergetics). doi: 10.1007/978-3-319-08195-3
  27. Heimburg T., Jackson A.D. On soliton propagation in biomembranes and nerves. Proc. Natl. Acad. Sci. U. S. A. 2005;102(28):9790–9795. doi: 10.1073/pnas.0503823102
  28. Shrivastava S., Schneider M.F. Evidence for two-dimensional solitary sound waves in a lipid controlled interface and its implications for biological signalling. J. R. Soc. Interface. 2014;11(97). Article No. 20140098. doi: 10.1098/rsif.2014.0098
  29. Mulkidjanian A.Y., Heberle J., Cherepanov D.A. Protons @ interfaces: Implications for biological energy conversion. Biochim. Biophys. Acta BBA - Bioenerg. 2006;1757(8):913–930. doi: 10.1016/j.bbabio.2006.02.015
  30. Amdursky N., Lin Y., Aho N., Groenhof G. Exploring fast proton transfer events associated with lateral proton diffusion on the surface of membranes. Proceedings of the National Academy of Sciences. 2019;116(7):2443–2451. doi: 10.1073/pnas.1812351116
  31. Shrivastava S., Kang K.H., Schneider M.F. Solitary shock waves and adiabatic phase transition in lipid interfaces and nerves. Phys. Rev. E. 2015;91(1). Article No. 012715. doi: 10.1103/PhysRevE.91.012715
  32. Gonzalez-Perez A., Mosgaard L.D., Budvytyte R., Villagran-Vargas E., Jackson A.D., Heimburg T. Solitary electromechanical pulses in lobster neurons. Biophysical Chemistry. 2016;216:51–59. doi: 10.1016/j.bpc.2016.06.005
  33. Gonzalez-Perez A., Budvytyte R., Mosgaard L.D., Nissen S., Heimburg T. Penetration of Action Potentials During Collision in the Median and Lateral Giant Axons of Invertebrates. Physical Review X. 2014;4(3). Article No. 031047. doi: 10.1103/PhysRevX.4.031047
  34. Fichtl B., Shrivastava S., Schneider M.F. Protons at the speed of sound: Predicting specific biological signaling from physics. Scientific Reports. 2016;6(1). Article No. 22874. doi: 10.1038/srep22874
  35. Kadantsev V.N., Goltsov A.N. Collective dynamics of domain structures in liquid crystalline lipid bilayers. Russian Technological Journal. 2022;10(4):44–54. doi: 10.32362/2500-316X-2022-10-4-44-54
  36. Nesterov S.V., Yaguzhinsky L.S., Vasilov R.G., Kadantsev V.N., Goltsov A.N. Contribution of the Collective Excitations to the Coupled Proton and Energy Transport along Mitochondrial Cristae Membrane in Oxidative Phosphorylation System. Entropy. 2022;24(12). Article No. 1813. doi: 10.3390/e24121813
  37. Tverdislov V.A., Tikhonov A.N., Iakovenko L.V. Fizicheskie mekhanizmy funktsionirovaniia biologicheskikh membran (Physical mechanisms of functioning of biological membranes). Moscow, 1987 (in Russ.).
  38. Yomosa S. Solitary Waves in One-Dimensional Hydrogen-Bonded Systems. J. Phys. Soc. Jpn. 1983;52(5):1866–1873. doi: 10.1143/JPSJ.52.1866
  39. Duan X., Scheiner S. Modeling of Coupled Proton Transfers by Analytic Functions. Int. J. Quantum Chem. 1992;44(19):109–124. doi: 10.1002/qua.560440713
  40. Kryachko E.S., Sokhan V.P. The Concept of Soliton-Carrier Collective Variable for Proton Transfer in Extended Hydrogen-Bonded Systems: Overview. In: Proton Transfer in Hydrogen-Bonded Systems. Ed. T. Bountis. New York: Plenum Press, 1992:105–119. doi: 10.1007/978-1-4615-3444-0_8
  41. Savin A.V., Zolotaryuk A.V. Dynamics of ionic defects and lattice solitons in a thermalized hydrogen-bonded chain. Phys. Rev. A. 1991;44(12):8167–8183. doi: 10.1103/PhysRevA.44.8167
  42. Ishikita H., Saito K. Proton transfer reactions and hydrogen-bond networks in protein environments. J. R. Soc. Interface. 2014;11(91). Article No. 20130518. doi: 10.1098/rsif.2013.0518
  43. Marsh D. Connectivity of membrane domains. Biophys. J. 1993;64(2):299–300. doi: 10.1016/S0006-3495(93)81368-7
  44. Vaz W.L.C. Percolation properties of two-component. two-phase phospholipid bilayers. Mol. Membr. Biol. 1995;12(1):39–43. doi: 10.3109/09687689509038493
  45. Griesbauer J., Wixforth A., Schneider M.F. Wave Propagation in Lipid Monolayers. Biophys. J. 2009;97(10):2710–2716. doi: 10.1016/j.bpj.2009.07.049
  46. Bolterauer H., Tuszyński J.A., Satarić M.V. Fröhlich and Davydov regimes in the dynamics of dipolar oscillations of biological membranes. Phys. Rev. A. 1991;44(2):1366–1381. doi: 10.1103/PhysRevA.44.1366
  47. Wack D.C., Webb W.W. Synchrotron x-ray study of the modulated lamellar phase P beta. Phys. Rev. A. 1989;40(5):2712–2730. doi: 10.1103/PhysRevA.40.2712
  48. Collins M.A. Solitons in Chemical Physics. In: Advances in Chemical Physics. Eds.: Prigogine I., Rice S.A. John Wiley & Sons. Ltd., 2007. P. 225–339. (Advances in Chemical Physics, V.53). doi: 10.1002/9780470142776.ch3
  49. Brown M.F. Curvature forces in membrane lipid-protein interactions. Biochemistry. 2012;51(49):9782–9795. doi: 10.1021/bi301332v
  50. Prats M., Tocanne J.F., Teissie J. Lateral proton conduction at a lipid/water interface. Effect of lipid nature and ionic content of the aqueous phase. European Journal of Biochemistry. 1987;162(2):379–385. doi: 10.1111/j.1432-1033.1987.tb10612.x
  51. Zakhvataev V.E. Localized density pulses in lipid membranes on the piсosecond time scale. Biophysics. 2017;62(3):396–406. doi: 10.1134/S0006350917030253
  52. Ramanthrikkovil V.A., Rzycki M., Yucknovsky A., Stuchebrukhov A., Drabik D., Amdursky N. Proton diffusion on the surface of mixed lipid membranes highlights the role of membrane composition. Biophysical Journal. 2024;123(24):4200–4210. doi: 10.1016/j.bpj.2024.07.002
  53. Venable R.M., Brown F.L.H., Pastor R.W. Mechanical properties of lipid bilayers from molecular dynamics simulation. Chemistry and Physics of Lipids. 2015;192:60–74. doi: 10.1016/j.chemphyslip.2015.07.014
  54. Davydov A.S. Solitons in quasi-one-dimensional molecular structures. Phys. Usp. 1982;25(12):898–918. doi: 10.1070/PU1982v025n12ABEH005012
  55. Lautrup B., Appali R., Jackson A.D., Heimburg T. The stability of solitons in biomembranes and nerves. The European Physical Journal E. 2011;34(6). Article No. 57. doi: 10.1140/epje/i2011-11057-0
  56. Weichselbaum E., Galimzyanov T., Batishchev O.V., Akimov S.A., Pohl P. Proton Migration on Top of Charged Membranes. Biomolecules. 2023;13(2). Article No. 352. doi: 10.3390/biom13020352
  57. Wu X., Hong J.J., Shin W., Ma L., Liu T. Diffusion-free Grotthuss topochemistry for high-rate and long-life proton batteries. Nature Energy. 2019;4(2):123–130. doi: 10.1038/s41560-018-0309-7

 

Содержание Оригинальная статья
Каданцев В.Н., Гольцов А.Н. Латеральный транспорт протонов вдоль тонких слоев воды на поверхности биомембран. Математическая биология и биоинформатика. 2026;21(1):200-219. doi: 10.17537/2026.21.200
(опубликована на рус. яз.)

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