Brazhnikov E.V., Kargatov A.M., Efimov A.V.
Structure of Looped Regions in β-α- and α-β-Arches in Abcd-Units of Globular Proteins
Mathematical Biology & Bioinformatics. 2016;11(2):159-169.
doi: 10.17537/2016.11.159.
References
- Phillips D.C. The hen egg-white lysozyme molecule. Proc. Natl. Acad. Sci. USA. 1967;57(3):483-495. doi: 10.1073/pnas.57.3.483
- Ptitsyn O.B. Stages in the mechanism of self-organization of protein molecules. Dokl. Akad. Nauk SSSR. 1973;210(5):1213-1215 (in Russ.)
- Wetlaufer D.B. Nucleation, rapid folding, and globular intrachain regions in proteins. Proc. Natl. Acad. Sci. USA. 1973;70(3):697-701. doi: 10.1073/pnas.70.3.697
- Efimov A.V., Boshkova E.A. Two Mechanisms of Protein Folding: A Theoretical Analysis. Russian Journal of Bioorganic Chemistry. 2014;40(6):665-672. doi: 10.1134/S1068162014060077
- Rudnev V.R., Pankratov A.N., Kulikova L.I., Dedus F.F., Tikhonov D.A., Efimov A.V. Conformational Analysis of Structural Motifs of α-α-Corner in the Computational Experiment of Molecular Dynamics. Math. Biol. Bioinf. 2014;9(2):575-584 (in Russ.). doi: 10.17537/2014.9.575
- Gordeev A.B., Kargatov A.M., Efimov A.V. PCBOST: Protein classification based on structural trees. Biochemical and Biophysical Research Communications. 2010;397(3):470-471. doi: 10.1016/j.bbrc.2010.05.136
- Efimov A.V. Super-secondary structure of beta-proteins. Molekuliarnaia biologiia (Mol Biol (Mosk)). 1982;16(4):799-806 (in Russ.).
- Efimov A.V. Structure of alpha-alpha-hairpins with short connections. Protein Engineering. 1991;4(3):245-250. doi: 10.1093/protein/4.3.245
- Brazhnikov E.V., Efimov A.V. Structure of alpha-helical hairpins with short connections in globular proteins. Molekuliarnaia biologiia (Mol Biol (Mosk)). 2001;35(1):100-108 (in Russ.).
- Efimov.A.V. A new super-secondary protein structure: the alpha alpha-angle. Molekuliarnaia biologiia (Mol Biol (Mosk)). 1984;18(6):1524-1537 (in Russ.).
- Efimov A.V. Structure of coiled β-β-hairpins and β-β-corners. FEBS Lett. 1991;284(2):288-292. doi: 10.1016/0014-5793(91)80706-9
- Boshkova E.A., Brazhnikov E.V., Efimov A.V. Relationship between structure and amino acid sequence of strongly twisted and coiled β-hairpins in globular proteins. Molekuliarnaia biologiia (Mol Biol (Mosk)). 2016;50(5) (in Russ.).
- Edwards M.S., Sternberg J.E., Thornton J.M. Structural and sequence patterns in the loops of βαβ units. Protein Engineering. 1987;1(3):173-181. doi: 10.1093/protein/1.3.173
- Efimov A.V. Standard structures in protein molecules. I. Alpha-beta hairpins. Molekuliarnaia biologiia (Mol Biol (Mosk)). 1986;20(2):329-339 (in Russ.).
- Efimov A.V. Standard structures in protein molecules. II. Beta-alpha hairpins. Molekuliarnaia biologiia (Mol Biol (Mosk)). 1986;20(2):340-345 (in Russ.).
- Efimov A.V. Standard structures in proteins. Progr. Biophys. Mol. Biol. 1993;60(3):201-239. doi: 10.1016/0079-6107(93)90015-C
- Gordeev A.B., Efimov A.V. Novel structural tree of (α+β)-proteins containing abCd units. Molekuliarnaia biologiia (Mol Biol (Mosk)). 2009;43(3):521-526 (in Russ.) doi: 10.1134/S0026893309030169
- Tatusova T.A., Madden T.L. Blast 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 1999;174(2):247-250. doi: 10.1111/j.1574-6968.1999.tb13575.x
- Sayle R., Milner-White J. RasMol: biomolecular graphics for all. Trends Biochem. Sci. 1995;20(9): 374-376. doi: 10.1016/S0968-0004(00)89080-5
- Koradi R., Billeter M., Wuthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 1996;14(1):51-55. doi: 10.1016/0263-7855(96)00009-4
