Русская версия English version   
Том 18   Выпуск 2   Год 2023
Коршунова А.Н., Лахно В.Д.

Переход от равномерного режима движения полярона к колебательному при изменении начального поляронного состояния

Математическая биология и биоинформатика. 2023;18(2):446-463.

doi: 10.17537/2023.18.446.

Список литературы

  1. Maniadis P., Kalosakas G., Rasmussen K.O., Bishop A.R. ac conductivity in a DNA charge transport model. Phys. Rev. E. 2005;72:021912. doi: 10.1103/PhysRevE.72.021912
  2. Komineas S., Kalosakas G., Bishop A.R. Effects of intrinsic base-pair fluctuations on charge transport in DNA. Phys. Rev. E. 2002;65:061905. doi: 10.1103/PhysRevE.65.061905
  3. Taniguchi M., Kawai T. DNA electronics. Physica E. 2006;33:1-12. doi: 10.1016/j.physe.2006.01.005
  4. Dauxois T., Peyrard M., Bishop A.R. Dynamics and thermodynamics of a nonlinear model for DNA denaturation. Phys. Rev. E. 1993;47:684. doi: 10.1103/PhysRevE.47.684
  5. Ojeda J.H., Lima R.P.A., Domínguez-Adame F., Orellana P.A. Trapping and motion of polarons in weakly disordered DNA molecules. Journal of Physics: Condensed Matter. 2009;21:285105. doi: 10.1088/0953-8984/21/28/285105
  6. Peyrard M., Cuesta-Lopez S., James G. Modelling DNA at the mesoscale: a challenge for nonlinear science? Nonlinearity. 2008;21:91-100. doi: 10.1088/0951-7715/21/6/T02
  7. Starikov E.B. Electron–phonon coupling in DNA: a systematic study. Philosophical Magazine. 2005;85:3435-3462. doi: 10.1080/14786430500157110
  8. Korshunova A.N., Lakhno V.D. A new type of localized fast moving electronic excitations in molecular chains. Physica E. 2014;60:206-209. doi: 10.1016/j.physe.2014.02.025
  9. Porath D., Cuniberti G., Di Felice R. Charge transport in DNA-based devices. Top. Curr. Chem. 2004;237:183-227. doi: 10.1007/b94477
  10. Murphy C.J., Arkin M.R., Jenkins Y., Ghatlia N.D., Bossmann S.H., Turro N.J., Barton J.K. Long-range photoinduced electron transfer through a DNA helix. Science. 1993;262(5136):1025-1029. doi: 10.1126/science.7802858
  11. Feldmann J., Leo K., Shah J., Miller D.A.B., Cunningham J.E., Meier T., von Plessen G., Schulze A., Thomas P., Schmitt-Rink S. Optical investigation of Bloch oscillations in a semiconductor superlattice. Phys. Rev. B. 1992;46:7252. doi: 10.1103/PhysRevB.46.7252
  12. Takeya Unuma, Yuto Itagaki and Soichiro Asakura. Room-temperature Bloch oscillations and interminiband Zener tunneling in a GaAs-based narrow-minigap superlattice. Applied Physics Express. 2021;14:081003. doi: 10.35848/1882-0786/ac114f
  13. Meggers E., Michel-Beyerle M.E., Giese B.J. Sequence dependent long range hole transport in DNA. J. Am. Chem. Soc. 1998;120:12950-12955. doi: 10.1021/ja983092p
  14. Fink H.-W., Schönenberger C. Electrical conduction through DNA molecules. Nature. 1999;398(6726):407-410. doi: 10.1038/18855
  15. Porath D., Bezryadin A., De Vries S., Dekker C. Direct measurement of electrical transport through DNA molecules. Nature. 2000;403(6770):635-638. doi: 10.1038/35001029
  16. Lewis F.D., Liu X., Liu J., Miller S.E., Hayes R.T., Wasielewski M.R. Direct measurement of hole transport dynamics in DNA. Nature. 2000;406:51-53. doi: 10.1038/35017524
  17. Díaz E., Lima R.P.A., Domínguez-Adame F., Bloch-like oscillations in the Peyrard-Bishop-Holstein model. Phys. Rev. B. 2008;78:134303. doi: 10.1103/PhysRevB.78.134303
  18. Yuan Li, Xiao-jing Liu, Ji-yong Fu, De-sheng Liu, Shi-jie Xie and Liang-mo Mei. Bloch oscillations in a one-dimensional organic lattice. Phys. Rev. B. 2006;74:184303. doi: 10.1103/PhysRevB.74.184303
  19. Buarque A.R.C., Lyra M.L., Dias W.S. Bloch-like superoscillations and unidirectional motion of phase-driven quantum walkers. Phys. Rev. A. 2021;103:012222. doi: 10.1103/PhysRevA.103.012222
  20. Zhongkai Huang, Masayuki Hoshina, Hajime Ishihara, Yang Zhao. Transient Dynamics of Super Bloch Oscillations of a 1D Holstein Polaron under the Influence of an External AC Electric Field. Annalen der Physik. 2019;531:1800303. doi: 10.1002/andp.201800303
  21. Herrero-Gómez C., Díaz E., Domínguez-Adame F. Super Bloch oscillations in the Peyrard–Bishop–Holstein model. Physics Letters A. 2012;376:555-558. doi: 10.1016/j.physleta.2011.10.053
  22. Pereira A.L.S., Lyra M.L., de Moura F.A.B.F., Ranciaro Neto A., Dias W.S. Nonlinear wave-packet dynamics resonantly driven by AC and DC fields. Communications in Nonlinear Science and Numerical Simulation. 2018;64:89-97 doi: 10.1016/j.cnsns.2018.04.016
  23. Holstein T. Studies of polaron motion: Part I. The molecular-crystal model. Annals of Phys. 1959;8:325-342. doi: 10.1016/0003-4916(59)90002-8
  24. Holstein T. Studies of polaron motion: Part II. The "small" polaron. Annals of Phys. 1959;8:343-389. doi: 10.1016/0003-4916(59)90003-X
  25. Korshunova A.N., Lakhno V.D. The Incipient Formation of the Internal Dynamics of a Uniformly Moving Polaron in a Polynucleotide Chain Subjected To a Constant Electric Field. Mathematical Biology and Bioinformatics. 2022;17(2):452-464. doi: 10.17537/2022.17.452
  26. Korshunova A.N., Lakhno V.D. Simulation of the Stationary and Nonstationary Charge Transfer Conditions in a Uniform Holstein Chain Placed in Constant Electric Field. Tech. Phys. 2018;63(9):1270-1276. doi: 10.1134/S1063784218090086
  27. Korshunova A.N., Lakhno V.D. Dependence of the nature of the Holstein polaron motion in a polynucleotide chain subjected to a constant electric field on the initial polaron state and the parameters of the chain. Journal of Physics: Conference Series. 2022;2155:012031. doi: 10.1088/1742-6596/2155/1/012031
  28. Lakhno V.D. Soliton-like Solutions and Electron Transfer in DNA. J. Biol. Phys. 2000;26:133-147. doi: 10.1023/A:1005275211233
  29. Lakhno V.D., Fialko N.S. HSSH-model of Hole transfer in DNA. Eur. Phys. J. B. 2005;43. 279-281. doi: 10.1140/epjb/e2005-00049-y
  30. Lakhno V.D., Fialko N.S. Solvation effects on hole mobility in the poly G/Poly C duplex. Russian Journ. of Phys. Chem. 2012;86:832-836. doi: 10.1134/S0036024412050196
  31. Lakhno V.D., Korshunova A.N. Bloch oscillations of a soliton in a molecular chain. Euro. Phys. J. B. 2007;55:85-87. doi: 10.1140/epjb/e2007-00045-3
  32. Lakhno V.D., Korshunova A.N. Electron motion in a Holstein molecular chain in an electric field. Eur. Phys. J. B. 2011;79:147-151. doi: 10.1140/epjb/e2010-10565-2
Содержание Оригинальная статья
Мат. биол. и биоинф.
2023;18(2):446-463
doi: 10.17537/2023.18.446
опубликована на рус. яз.

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