Русская версия English version   
Том 8   Выпуск 2   Год 2013
Оплачко Е.С., Устинин Д.М., Устинин М.Н.

Облачные технологии и их применение в задачах вычислительной биологии

Математическая биология и биоинформатика. 2013;8(2):449-466.

doi: 10.17537/2013.8.449.

Список литературы

  1. Huth A, Cebula J. The Basics of Cloud Computing. Carnegie Mellon University. 2011. http://www.us-cert.gov/sites/default/files/publications/CloudComputingHuthCebula.pdf (accessed 03 September 2013).
  2. Soghoian Ch. Caught in the cloud: privacy, encryption, and government back doors in the web 2.0 Era. J. on Telecomm. and High Tech. L. 2009;8:359-424.
  3. Lakhno VD, Isaev EA, Pugachev VD, Zaitsev AYu, Fialko NS, Rykunov SD, Ustinin MN. Development of information and communication technologies in Pushchino Research Center of RAS. Matematicheskaya biologiya i bioinformatika (Mathematical Biology and Bioinformatics). 2012;7(2):529-544 (in Russ.). doi: 10.17537/2012.7.529
  4. Isaev EA, Kornilov VV, Tarasov PA. Scientific computer nets: problems and achievements in organizing the communication of great volumes of scientific data. Matematicheskaya biologiya i bioinformatika (Mathematical Biology and Bioinformatics). 2013;8(1):161-181 (in Russ.). doi: 10.17537/2013.8.161
  5. Hoff Ch, Simmonds P. Security guidance for critical areas of focus in cloud computing. Website of Cloud Security Alliance. 2011:12-20. https://cloudsecurityalliance.org/guidance/csaguide.v3.0.pdf (accessed 03 September 2013).
  6. Khajeh-Hosseini A, Sommerville I, Sriram I. Research Challenges for Enterprise Cloud Computing. arXiv.org: Cornell University Library. http://arxiv.org/ftp/arxiv/papers/1001/1001.3257.pdf (accessed 03 September 2013).
  7. An overview on cloud computing for research and science published. 2012. http://www.e-irg.eu/news/news/479/an-overview-on-cloud-computing-for-research-and-science-published.html (accessed 03 September 2013).
  8. Rosenblum M, Garfinkel T. Virtual Machine Monitors: Current Technology and Future Trends. Computer 2005;38(5)39-47. http://doi.ieeecomputersociety.org/10.1109/MC.2005.176 (accessed 03 September 2013). doi: 10.1109/MC.2005.176
  9. Cloud Computing: 7 security problems. Biuro Solomatina (Bureau Solomatina). http://www.bureausolomatina.ru/ru/themes_in_progress/clouds/6 (accessed 03 September 2013) (in Russ.).
  10. Fedorov A, Martynov D. Oblachnaia platforma Microsoft. (Microsoft Azure: Microsoft cloud platform). Moscow; 2010 (in Russ.).
  11. Stiefel M. Cloud Computing with Microsoft Azure. Website of Reliable Software, Inc. 2009. http://reliablesoftware.com/presentations/Introduction%20to%20Cloud%20Computing%20with%20Microsoft%20Azure.pdf. (accessed 03 September 2013).
  12. IBM Cloud Computing. Website of IBM. http://www.ibm.com/ru/cloud/ (accessed 03 September 2013).
  13. Understanding_and_Leveraging_Cloud_Computing. Website of IBM. 2008. http://www.ibm.com/ru/cloud/pdf/Understanding_and_Leveraging_Cloud_Computing_RU-1_validated_Feb2_KI_rus_s5_hyperlinks.pdf (accessed 03 September 2013).
  14. Varia J. Building GrepTheWeb in the Cloud, Part 1: Cloud Architectures. Amazon Web Services. 2008. http://aws.amazon.com/articles/1632?_encoding=UTF8&jiveRedirect=1 (accessed 03 September 2013).
  15. Amazon SimpleDB. Website of Amazon Web Services. http://aws.amazon.com/simpledb/ (accessed 03 September 2013).
  16. Krampis K. Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community. BMC Bioinformatics. 2012. doi: 10.1186/1471-2105-13-42
  17. Clouds. Website of Science Clouds. http://scienceclouds.org/infrastructure-clouds/ (accessed 03 September 2013).
  18. Ramakrishnan L, Campbell S, Canon RS, Declerck T, Sakrejda I. Magellan: Experiences from a Science Cloud. In: ScienceCloud’11 (June 8, 2011, San Jose, California, USA). 2011. http://datasys.cs.iit.edu/events/ScienceCloud2011/p07.pdf (accessed 03 September 2013).
  19. Lakhno V, Nazipova N, Kim V, Filippov S, Zaitsev A, Fialko N, Tyulbasheva G, Ustinin D, Teplukhin A, Ustinin M. Integrated Mathematical Model of the Living Cell. Matematicheskaya biologiya i bioinformatika (Mathematical Biology and Bioinformatics). 2007;2:361-376 (in Russ.). doi: 10.17537/2007.2.361
  20. Mathematical Cell. http://www.mathcell.ru/en/about.shtml (accessed 03 September 2013).
  21. Lakhno VD. Mathematical biology and bioinformatics. Herald of the Russian Academy of Sciences. 2011;81(5):539-545. doi: 10.1134/S1019331611050029
  22. Khrushchev SS, Abaturova AM, Diakonova AN, Ustinin DM, Zlenko DV, Fedorov VA, Kovalenko IB, Riznichenko GYu, Rubin AB. Multi-particle Brownian Dynamics software ProKSim for protein-protein interactions modeling. Komp'iuternye issledovaniia i modelirovanie (Computer Research and Modeling). 2013;5(1):47-64 (in Russ.).
  23. Ustinin DM, Kovalenko IB, Grachev EA, Riznichenko GYu, Rubin AB. In: Dinamicheskie modeli protsessov v kletkakh i subkletochnykh nanostrukturakh (Dynamic Models of the processes in cells and sub-cell nanostructures. Regula). Moscow-Izevsk; 2010. P. 241-262 (in Russ.).
  24. Ustinin DM, Kovalenko IB, Riznichenko GYu, Rubin AB. Komp'iuternye issledovaniia i modelirovanie (Computer Research and Modeling). 2013;5(1):65-81 (in Russ.).
  25. Kovalenko IB, Abaturova AM, Gromov PA, Ustinin DM, Grachev EA, Riznichenko GYu, Rubin AB. Direct simulation of plastocyanin and cytochrome f interactions in solution. Physical Biology. 2006(3):121-129. doi: 10.1088/1478-3975/3/2/004
  26. Loew LM, Schaff JC. The Virtual Cell: a software environment for computational cell biology. TRENDS in Biotechnology. 2001;19(10). doi: 10.1016/S0167-7799(01)01740-1
  27. Tomita M. E-Cell: software environment for whole-cell simulation. Bioinformatics. 1999;15(1):72-84. doi: 10.1093/bioinformatics/15.1.72
  28. Casanova H. The virtual Instrument: Support for Grid-enabled MCell simulations. The International Journal of High Performance Computing Applications. 2004;18(1):3-17. doi: 10.1177/1094342004041290
  29. Isaev EA, Kornilov VV. The problem of processing and storage of large amounts of scientific data and approaches to its solution. Matematicheskaya biologiya i bioinformatika (Mathematical Biology and Bioinformatics). 2013;8(1):49-65. (in Russ.). doi: 10.17537/2013.8.49
  30. Ustinin MN, Kronberg E, Filippov SV, Sychev VV, Sobolev EV, Llinás R. Kinematic visualization of human magnetic encephalography. Mathematical Biology and Bioinformatics. 2010;5(2):176-187. doi: 10.17537/2010.5.176
Содержание Оригинальная статья
Мат. биол. и биоинф.
2013;8(2):449-466
doi: 10.17537/2013.8.449
опубликована на рус. яз.

Аннотация (рус.)
Аннотация (англ.)
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