Русская версия English version   
Том 9   Выпуск 1   Год 2014
Маркевич Н.И., Хоек Я.

Компьютерное моделирование острого и хронического этанол-индуцированного окислительного стресса

Математическая биология и биоинформатика. 2014;9(1):63-88.

doi: 10.17537/2014.9.63.

Список литературы

  1. Bailey SM, Cunningham CC. Free Radic. Biol. Med. 2002;32:11-16. doi: 10.1016/S0891-5849(01)00769-9
  2. Cahill A, Cunningham CC, Adachi M, Ishii H, Bailey SM, Fromenty B, Davies A. Alcohol. Clin. Exp. Res. 2002;26:907-915. doi: 10.1111/j.1530-0277.2002.tb02621.x
  3. Cederbaum AI, Lu Y, Wu D. Arch. Toxicol. 2009;83:519-548. doi: 10.1007/s00204-009-0432-0
  4. Muller FL, Liu Y, Van Remmen H. J. Biol. Chem. 2004;279:49064-49073. doi: 10.1074/jbc.M407715200
  5. Cunningham CC, Malloy CR, Radda GK. Biochim. Biophys. Acta. 1986;885:12-22. doi: 10.1016/0167-4889(86)90033-9
  6. Bailey SM, Pietsch EC, Cunningham CC. Free Radic. Biol. Med. 1999;27:891-900. doi: 10.1016/S0891-5849(99)00138-0
  7. Bailey SM, Cunningham CC. Hepatology. 1998;28:1318-1326. doi: 10.1002/hep.510280521
  8. Sugano T, Handler JA, Yoshihara H, Kizaki Z, Thurman RG. J. Biol. Chem. 1990;265:21549-21553.
  9. Tikunov A, Johnson CB, Pediaditakis P, Markevich N, Macdonald JM, Lemasters JJ, Holmuhamedov E. Arch. Biochem. Biophys. 2010;495:174-181. doi: 10.1016/j.abb.2010.01.008
  10. Hirano T, Kaplowitz N, Tsukamoto H, Kamimura S, Fernandez-Checa JC. Hepatology. 1992;16:1423-1427. doi: 10.1002/hep.1840160619
  11. Bailey SM, Patel VB, Young TA, Asayama K, Cunningham CC. Alcohol. Clin. Exp. Res. 2001;25:726-733. doi: 10.1111/j.1530-0277.2001.tb02273.x
  12. Marcinkeviciute A, Mildaziene V, Crumm S, Demin O, Hoek JB, Kholodenko B. Biochem. J. 2000;349:519-526. doi: 10.1042/0264-6021:3490519
  13. Thayer WS, Ohnishi T, Rubin E. Biochim. Biophys. Acta. 1980;591:22-36. doi: 10.1016/0005-2728(80)90217-0
  14. Thayer WS, Rubin E. J. Biol. Chem. 1981;256:6090-6097.
  15. Piquet MA, Nogueira V, Devin A, Sibille B, Filippi C, Fontaine E, Roulet M, Rigoulet M, Leverve XM. FEBS Lett. 2000;468:239-242. doi: 10.1016/S0014-5793(00)01225-4
  16. Fernandez-Checa JC, Kaplowitz N, Colell A, Garcia-Ruiz C. Alcohol. Health. Res. World. 1997;21:321-324.
  17. Cadenas E, Boveris A. Biochem. J. 1980;188:31-37.
  18. Demin OV, Kholodenko BN, Skulachev VP. Mol. Cell. Biochem. 1998;184:21-33. doi: 10.1023/A:1006849920918
  19. Grivennikova VG, Vinogradov AD. Biochim. Biophys. Acta. 1982;682:491-495. doi: 10.1016/0005-2728(82)90065-2
  20. Beard DA. PLoS Comput. Biol. 2005;1:e36. doi: 10.1371/journal.pcbi.0010036
  21. Toppo S, Flohe L, Ursini F, Vanin S, Maiorino M. Biochim. Biophys. Acta. 2009;1790:1486-1500.
  22. Carlberg I, Mannervik B. J. Biol. Chem. 1975;250:5475-5480.
  23. Grivennikova VG, Kotlyar AB, Karliner JS, Cecchini G, Vinogradov AD. Biochemistry. 2007;46:10971-10978. doi: 10.1021/bi7009822
  24. Verkhovskaya ML, Belevich N, Euro L, Wikstrom M, Verkhovsky MI. Proc. Natl. Acad. Sci. U S A. 2008;105:3763-3767. doi: 10.1073/pnas.0711249105
  25. Ransac S, Arnarez C, Mazat JP. Biochim. Biophys. Acta. 2011;1797:641-648.
  26. Kussmaul L, Hirst J. Proc. Natl. Acad. Sci. U S A. 2006;103:7607-7612. doi: 10.1073/pnas.0510977103
  27. Brandt U. Annu. Rev. Biochem. 2006;75:69-92. doi: 10.1146/annurev.biochem.75.103004.142539
  28. Ohnishi T. Biochim. Biophys. Acta. 1998;1364:186-206. doi: 10.1016/S0005-2728(98)00027-9
  29. Moser CC, Farid TA, Chobot SE, Dutton PL. Biochim. Biophys. Acta. 2006;1757:1096-1109.
  30. Murphy MP. Biochem. J. 2009;417:1-13. doi: 10.1042/BJ20081386
  31. Hsu JL, Hsieh Y, Tu C, O'Connor D, Nick HS, Silverman DN. J. Biol. Chem. 1996;271:17687-17691. doi: 10.1074/jbc.271.30.17687
  32. Tyler DD. Biochem. J. 1975;147:493-504.
  33. Crofts AR, Lhee S, Crofts SB, Cheng J, Rose S. Biochim. Biophys. Acta. 2006;1757:1019-1034.
  34. Shinkarev VP, Wraight CA. FEBS Lett. 2007;581:1535-1541. doi: 10.1016/j.febslet.2007.03.037
  35. Crofts AR, Shinkarev VP, Kolling DR, Hong S. J. Biol. Chem. 2003;278:36191-36201. doi: 10.1074/jbc.M305461200
  36. Bielski BH, Cabelli DE. Int. J. Radiat. Biol. 1991;59:291-319. doi: 10.1080/09553009114550301
  37. Battistuzzi G, Borsari M, Cowan JA, Ranieri A, Sola M. J. Am. Chem. Soc. 2002;124:5315-5124. doi: 10.1021/ja017479v
  38. Butler J, Jayson GG, Swallow AJ. Biochim. Biophys. Acta. 1975;408:215-222. doi: 10.1016/0005-2728(75)90124-3
  39. Butler J, Koppenol WH, Margoliash E. J. Biol. Chem. 1982;257:10747-10750.
  40. Covian R, Trumpower BL. Biochim. Biophys. Acta. 2008;1777:1044-1052.
  41. Engstrom G, Rajagukguk R, Saunders AJ, Patel CN, Rajagukguk S, Merbitz-Zahradnik T, Xiao K, Pielak GJ, Trumpower B, Yu CA, Yu L, Durham B, Millett F. Biochemistry. 2003;42:2816-2824. doi: 10.1021/bi027213g
  42. Millett F, Durham B. Photosynth. Res. 2004;82:1-16. doi: 10.1023/B:PRES.0000040434.77061.ca
  43. Takebe G, Yarimizu J, Saito Y, Hayashi T, Nakamura H, Yodoi J, Nagasawa S, Takahashi K. J. Biol. Chem. 2002;277:41254-41258. doi: 10.1074/jbc.M202773200
  44. Ulusu NN, Tandogan B. Mol. Cell. Biochem. 2007;303:45-51. doi: 10.1007/s11010-007-9454-1
  45. Mailloux RJ, Harper ME. Faseb. J. 2011;24:2495-2506. doi: 10.1096/fj.09-151803
  46. Boveris A. Medicina (B Aires). 1998;58:350-356.
  47. Tamura T, McMicken HW, Smith CV, Hansen TN. Biochem. Biophys. Res. Commun. 1996;222:659-663. doi: 10.1006/bbrc.1996.0800
  48. Calamita G, Gena P, Meleleo D, Ferri D, Svelto M. Biochim. Biophys. Acta. 2006;1758:1018-1024.
  49. Vinogradov AD. Biochim. Biophys. Acta. 1998;1364:169-185. doi: 10.1016/S0005-2728(98)00026-7
  50. Lambert AJ, Buckingham JA, Boysen HM, Brand MD. Aging Cell. 2011;9:78-91. doi: 10.1111/j.1474-9726.2009.00538.x
  51. Hackenbrock CR, Chazotte B, Gupte SS. J. Bioenerg. Biomembr. 1986;18:331-368. doi: 10.1007/BF00743010
  52. Vinogradov AD. Biochim. Biophys. Acta. 2008;1777:729-734.
  53. Efremov RG, Baradaran R, Sazanov LA. Nature. 2010;465:441-445. doi: 10.1038/nature09066
  54. Vinogradov AD, Sled VD, Burbaev DS, Grivennikova VG, Moroz IA, Ohnishi T. FEBS Lett. 1995;370:83-87. doi: 10.1016/0014-5793(95)00803-H
  55. Magnitsky S, Toulokhonova L, Yano T, Sled VD, Hagerhall C, Grivennikova VG, Burbaev DS, Vinogradov AD, Ohnishi T. J. Bioenerg. Biomembr. 2002;34:193-208. doi: 10.1023/A:1016083419979
  56. Kao MC, Nakamaru-Ogiso E, Matsuno-Yagi A, Yagi T. Biochemistry. 2005;44:9545-9554. doi: 10.1021/bi050708w
  57. Hirst J, King MS, Pryde KR. Biochem. Soc. Trans. 2008;36:976-980. doi: 10.1042/BST0360976
  58. Mitchell P. FEBS Lett. 1975;56:1-6. doi: 10.1016/0014-5793(75)80098-6
  59. Crofts AR, Barquera B, Gennis RB, Kuras R, Guergova-Kuras M, Berry EA. Biochemistry. 1999;38:15807-15826. doi: 10.1021/bi990962m
  60. Yu CA, Cen X, Ma HW, Yin Y, Yu L, Esser L, Xia D. Biochim. Biophys. Acta. 2008;1777:1038-1043.
  61. Cape JL, Bowman MK, Kramer DM. Proc. Natl. Acad. Sci. U S A. 2007;104:7887-7892. doi: 10.1073/pnas.0702621104
  62. Vinnakota KC, Bassingthwaighte JB. Am. J. Physiol. Heart. Circ. Physiol. 2004;286:H1742-H1749. doi: 10.1152/ajpheart.00478.2003
  63. Wu F, Yang F, Vinnakota KC, Beard DA. J. Biol. Chem. 2007;282:24525-24537. doi: 10.1074/jbc.M701024200
  64. Schwerzmann K, Cruz-Orive LM, Eggman R, Sanger A, Weibel ER. J. Cell. Biol. 1986;102:97-103. doi: 10.1083/jcb.102.1.97
  65. Selivanov VA, Votyakova TV, Zeak JA, Trucco M, Roca J, Cascante M. PLoS Comput. Biol. 2009;5:e1000619. doi: 10.1371/journal.pcbi.1000619
  66. Fernandez-Checa JC, Ookhtens M, Kaplowitz N. J. Clin. Invest. 1989;83:1247-1252. doi: 10.1172/JCI114008
  67. Fernandez-Checa JC, Garcia-Ruiz C, Ookhtens M, Kaplowitz N. J. Clin. Invest. 1991;87:397-405. doi: 10.1172/JCI115010
  68. Deaciuc IV, Fortunato F, D'Souza NB, Hill DB, Schmidt J, Lee EY, McClain CJ. Alcohol. Clin. Exp. Res. 1999;23:349-356. doi: 10.1111/j.1530-0277.1999.tb04121.x
  69. Volpi E, Lucidi P, Cruciani G, Monacchia F, Reboldi G, Brunetti P, Bolli GB, De Feo P. J. Nutr. 1997;127:2199-2204.
  70. Tretter L, Adam-Vizi V. J. Neurosci. 2004;24:7771-7778. doi: 10.1523/JNEUROSCI.1842-04.2004
  71. Starkov AA, Fiskum G, Chinopoulos C, Lorenzo BJ, Browne SE, Patel MS, Beal MF. J. Neurosci. 2004;24:7779-7788. doi: 10.1523/JNEUROSCI.1899-04.2004
  72. Hoek JB, Rydstrom J. Biochem. J. 1988;254:1-10.
Содержание Оригинальная статья
Мат. биол. и биоинф.
2014;9(1):63-88
doi: 10.17537/2014.9.63
опубликована на англ. яз.

Аннотация (англ.)
Аннотация (рус.)
Полный текст (англ., pdf)
Список литературы

 

  Copyright ИМПБ РАН © 2005-2024