Applying Principal Component Analysis for Macromolecular Objects Diffraction Images Sorting

Mathematical Biology & Bioinformatics. 2013;8(2):708-715.

doi: 10.17537/2013.8.708.

1. DiMauro LF, Arthur J, Berrah N, Bozek J, Galayda JN, Hastings J. Progress report on the LCLS XFEL at SLAC. J. Phys.: Conf. Ser. 2007;88:012058. doi: 10.1088/1742-6596/88/1/012058
2. RIKEN. First X-ray lasing of SACLA: Next-generation facility up and running with powerful new X-ray laser. ScienceDaily. 2011. http://www.sciencedaily.com/releases/2011/06/110613053815.htm (accessed 16 December 2013).
3. European X-Ray Free-Electron Laser tunnel construction completed. Phys. org: web-based science, research and technology news service. 2012. http://phys.org/news/2012-06-european-x-ray-free-electron-laser-tunnel.html (accessed 16 December 2013).
4. Chapman HN, Fromme P, Barty A, White TA, Kirian RA, Aquila A, Hunter MS, Schulz J, DePonte DP, Weierstall U et al. Femtosecond X-ray protein nanocrystallography. Letters to Nature. 2011;470:73-78. doi: 10.1038/nature09750
5. Youngman C. Data acquisition and Controls. XFEL Users’ Meeting. 2012. http://www.xfel.eu/sites/site_xfel-gmbh/content/e63594/e65073/e126274/e134393/3Youngman_DataAcquisitionandControls_eng.pdf (accessed 16 December 2013).
6. Mancuso AP, Aquila A, Borchers G, Giewekemeyer K, Reimers N. Scientific Instrument Single Particles, Clusters, and Biomolecules (SPB). Technical Design Report. 2013. https://docs.xfel.eu/alfresco/d/a/workspace/SpacesStore/497 (accessed 16 December 2013).
7. Pearson K. On lines and planes of closest fit to systems of points in space. Philosophical Magazine. 1901;2:559-572. doi: 10.1080/14786440109462720
8. Oddershede J, Nielsen K, Stahl K. Using X-ray powder diffraction and principal component analysis to determine structural properties for bulk samples of multiwall carbon nanotubes. Zeitschrift für Kristallographie. 2007;222:186-192. doi: 10.1524/zkri.2007.222.3-4.186
9. Bosco JP da Silva, Ramos MN. Principal Component Analysis of Molecular Geometries of Cis- and Trans-C2H2X2. J. Braz. Chem. Soc. 2004;15(1):43-49.
10. Li W, Zhong Y, Yu D, Qu D, Sun B, Li M, Liu J. Application of principal component analysis for identification of drugs packed in anthropomorphic phantom. ARPN Journal of Engineering and Applied Sciences. 2012;7(7):915-921.
11. Yata M, Yoshida C, Fujisawa S, Mizuta S, Yoshinaka R. Identification and characterization of molecular species of collagen in fish skin. Journal of Food Science. 2011;66:247-251. doi: 10.1111/j.1365-2621.2001.tb11325.x
12. Cintron C, Hong BS, Covington HI, Macarak EJ. Heterogeneity of collagens in rabbit cornea: type III collagen. Invest. Ophthalmol. Vis. Sci. 1988;29(5):767-775.
13. Bornstein P, Sage H. Structurally distinct collagen types. Annual review of biochemistry. 1980;49:957-1003. doi: 10.1146/annurev.bi.49.070180.004521
14. Altarelli M, Kurta R, Vartanyants IA. X-ray cross-correlation analysis and local symmetries of disordered systems: General theory. Phys. Rev. B. 2010;82(10):104207. doi: 10.1103/PhysRevB.82.104207
15. Kurta RP, Ostrovskii BI, Singer A, Gorobtsov OY, Shabalin A, Dzhigaev D, Yefanov OM, Zozulya AV, Sprung M, Vartanyants IA. X-ray cross-correlation analysis of liquid crystal membranes in the vicinity of the hexatic-smectic phase transition. Phys. Rev. E. 2013;88:044501. doi: 10.1103/PhysRevE.88.044501
16. Kurta RP, Dronyak R, Altarelli M, Weckert E, Vartanyants IA. Solution of the phase problem for coherent scattering from a disordered system of identical particles. New J. Phys. 2013;15:013059. doi: 10.1088/1367-2630/15/1/013059